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CU20 on Exchange 2013 failed on Transport service.

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OK my Exchange server transport service stopped working. After some trouble shooting the Microsoft Filtering and Management service was not running as well I tried to disable the filtering service via powershell it stated it was disabled and I rebooted. The transport service will still not run error code 1068 still point to the filtering service not running . After some more research I found a few threads that stated if I apply a CU update it will refresh and fix the Transport and Filtering issues as it installs the "new" files. So on Step 9 of the CU the transport service fails with this error.

Exchange Server component Mailbox role: Transport service failed.
Error: Error:
The following error was generated when "$error.Clear();
# Apply XML Transforms to FIPS configuration file if schema changed
Write-ExchangeSetupLog -Info...


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